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vector with sapi  (New England Biolabs)


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    Structured Review

    New England Biolabs vector with sapi
    Vector With Sapi, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 98/100, based on 954 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/sapi/SapI/pm42820952-178-25-28
    Average 98 stars, based on 954 article reviews
    vector with sapi - by Bioz Stars, 2026-10
    98/100 stars

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    Related Articles

    Sequencing:

    Article Title: CRISPR-engineered inducible flocculation in Komagataella phaffii enables enhanced biomass separation for biopharmaceutical production
    Article Snippet: The NANOBODY ® VHH B coding sequence was synthetized by GeneArt (Thermo Fisher Scientific) as a synthetic DNA construct downstream of and in frame with the alpha mating factor (aMF) signal peptide sequence from S. cerevisiae and was delivered cloned into a pMA-RQ plasmid backbone. .. Both plasmids were digested with SapI (NEB) according to manufacturer’s instructions to remove the stuffer sequence (pBSY5Z) or to release the DNA fragment encoding the aMF-NANOBODY ® VHH B fusion protein. pBSY5Z plasmid backbone (3068 bp) and aMF-NANOBODY ® VHH B encoding DNA fragment (2148 bp) fragments were purified by gel extraction (QIAquick gel extraction kit, Qiagen) and assembled by ligation (Quick ligation kit, NEB). .. Plasmids pBB3Zi_086, pBB3Hi_095, pBB3Hi_095, and pBB3Zi_098 were generated via Golden Gate assembly as described ( ). pBB1 basic Golden Gate modules (pBB1_PDF_12, pBB1_PDC_12, pBB1_MIT1_23, pBB1_MXR1_23, pBB1_ScRPL3TT_34) were synthetized from GeneArt (Thermo Fisher Scientific).

    Plasmid Preparation:

    Article Title: CRISPR-engineered inducible flocculation in Komagataella phaffii enables enhanced biomass separation for biopharmaceutical production
    Article Snippet: The NANOBODY ® VHH B coding sequence was synthetized by GeneArt (Thermo Fisher Scientific) as a synthetic DNA construct downstream of and in frame with the alpha mating factor (aMF) signal peptide sequence from S. cerevisiae and was delivered cloned into a pMA-RQ plasmid backbone. .. Both plasmids were digested with SapI (NEB) according to manufacturer’s instructions to remove the stuffer sequence (pBSY5Z) or to release the DNA fragment encoding the aMF-NANOBODY ® VHH B fusion protein. pBSY5Z plasmid backbone (3068 bp) and aMF-NANOBODY ® VHH B encoding DNA fragment (2148 bp) fragments were purified by gel extraction (QIAquick gel extraction kit, Qiagen) and assembled by ligation (Quick ligation kit, NEB). .. Plasmids pBB3Zi_086, pBB3Hi_095, pBB3Hi_095, and pBB3Zi_098 were generated via Golden Gate assembly as described ( ). pBB1 basic Golden Gate modules (pBB1_PDF_12, pBB1_PDC_12, pBB1_MIT1_23, pBB1_MXR1_23, pBB1_ScRPL3TT_34) were synthetized from GeneArt (Thermo Fisher Scientific).

    Article Title: Poly(A) variants supporting robust transmission stability in bacteria and high protein expression in animals for mRNA in vitro transcription
    Article Snippet: .. The annealing product was then ligated into the pUC57 vector digested by EcoRI (NEB, Cat# R0101S) and SapI (NEB, Cat# R0569S) using T4 DNA ligase (NEB, Cat# M0202S). .. Positive clones were screened and confirmed by Sanger sequencing at Genewiz.

    Purification:

    Article Title: CRISPR-engineered inducible flocculation in Komagataella phaffii enables enhanced biomass separation for biopharmaceutical production
    Article Snippet: The NANOBODY ® VHH B coding sequence was synthetized by GeneArt (Thermo Fisher Scientific) as a synthetic DNA construct downstream of and in frame with the alpha mating factor (aMF) signal peptide sequence from S. cerevisiae and was delivered cloned into a pMA-RQ plasmid backbone. .. Both plasmids were digested with SapI (NEB) according to manufacturer’s instructions to remove the stuffer sequence (pBSY5Z) or to release the DNA fragment encoding the aMF-NANOBODY ® VHH B fusion protein. pBSY5Z plasmid backbone (3068 bp) and aMF-NANOBODY ® VHH B encoding DNA fragment (2148 bp) fragments were purified by gel extraction (QIAquick gel extraction kit, Qiagen) and assembled by ligation (Quick ligation kit, NEB). .. Plasmids pBB3Zi_086, pBB3Hi_095, pBB3Hi_095, and pBB3Zi_098 were generated via Golden Gate assembly as described ( ). pBB1 basic Golden Gate modules (pBB1_PDF_12, pBB1_PDC_12, pBB1_MIT1_23, pBB1_MXR1_23, pBB1_ScRPL3TT_34) were synthetized from GeneArt (Thermo Fisher Scientific).

    Gel Extraction:

    Article Title: CRISPR-engineered inducible flocculation in Komagataella phaffii enables enhanced biomass separation for biopharmaceutical production
    Article Snippet: The NANOBODY ® VHH B coding sequence was synthetized by GeneArt (Thermo Fisher Scientific) as a synthetic DNA construct downstream of and in frame with the alpha mating factor (aMF) signal peptide sequence from S. cerevisiae and was delivered cloned into a pMA-RQ plasmid backbone. .. Both plasmids were digested with SapI (NEB) according to manufacturer’s instructions to remove the stuffer sequence (pBSY5Z) or to release the DNA fragment encoding the aMF-NANOBODY ® VHH B fusion protein. pBSY5Z plasmid backbone (3068 bp) and aMF-NANOBODY ® VHH B encoding DNA fragment (2148 bp) fragments were purified by gel extraction (QIAquick gel extraction kit, Qiagen) and assembled by ligation (Quick ligation kit, NEB). .. Plasmids pBB3Zi_086, pBB3Hi_095, pBB3Hi_095, and pBB3Zi_098 were generated via Golden Gate assembly as described ( ). pBB1 basic Golden Gate modules (pBB1_PDF_12, pBB1_PDC_12, pBB1_MIT1_23, pBB1_MXR1_23, pBB1_ScRPL3TT_34) were synthetized from GeneArt (Thermo Fisher Scientific).

    Ligation:

    Article Title: CRISPR-engineered inducible flocculation in Komagataella phaffii enables enhanced biomass separation for biopharmaceutical production
    Article Snippet: The NANOBODY ® VHH B coding sequence was synthetized by GeneArt (Thermo Fisher Scientific) as a synthetic DNA construct downstream of and in frame with the alpha mating factor (aMF) signal peptide sequence from S. cerevisiae and was delivered cloned into a pMA-RQ plasmid backbone. .. Both plasmids were digested with SapI (NEB) according to manufacturer’s instructions to remove the stuffer sequence (pBSY5Z) or to release the DNA fragment encoding the aMF-NANOBODY ® VHH B fusion protein. pBSY5Z plasmid backbone (3068 bp) and aMF-NANOBODY ® VHH B encoding DNA fragment (2148 bp) fragments were purified by gel extraction (QIAquick gel extraction kit, Qiagen) and assembled by ligation (Quick ligation kit, NEB). .. Plasmids pBB3Zi_086, pBB3Hi_095, pBB3Hi_095, and pBB3Zi_098 were generated via Golden Gate assembly as described ( ). pBB1 basic Golden Gate modules (pBB1_PDF_12, pBB1_PDC_12, pBB1_MIT1_23, pBB1_MXR1_23, pBB1_ScRPL3TT_34) were synthetized from GeneArt (Thermo Fisher Scientific).

    Clone Assay:

    Article Title: A systematic cross-modal approach identifies astrocytic VCAM1 as a regulator of hippocampal synapse development
    Article Snippet: .. Forward and reverse oligos were designed and SapI (NEB) restriction site overhangs were added. gRNA sequences were cloned into pAAV-U6::gRNA-CAG::FLEX-GFP using SapI restriction enzyme. .. AAVs were produced using pRep/Cap (AAV2/5, Addgene #232922) and pΔF6 (Addgene #112867) helper plasmids using previously established iodixanol purification.

    Polymerase Chain Reaction:

    Article Title: An optogenetics-compatible red fluorescent calcium indicator with negligible blue light photoactivation
    Article Snippet: Plasmid libraries were constructed using 2-fragment Gibson assembly of one vector backbone and one insert (NEBuilder HiFi DNA Assembly, NEB). .. The pDx vectors were digested with SacI-HF (NEB) and SapI (NEB), and pGP vectors were linearized by PCR (pGP_F and pGP_R). .. Gibson products were used to transform XL-10 Gold Ultracompetent Cells (Agilent Technologies) following the manufacturer’s instructions.

    other:

    Article Title: Coordination of sequential RNase activities in an ancient molecular machine
    Article Snippet: All cloned constructs were sequenced either via Sanger sequencing or full plasmid sequencing at Microsynth Seqlab GmbH.



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